Each volume is copied twice into the same destination: once hot with the container running, once cold after it is stopped (backup/app.py:127-131). rsync ran with -b, so --delete did not remove a file the source had dropped between the passes - it renamed it. Stopping a container is exactly what makes the source drop files: a graceful shutdown flushes, and the format rolls its commit point. For an opaque payload the twin is stale bytes nobody reads. For a format that enumerates its own directory it is corruption. Lucene resolves the current commit by parsing every file starting with segments as a radix-36 generation, so a restored segments_3~ raises NumberFormatException, the shard store cannot be read, and the primary is left NO_VALID_SHARD_COPY. With .security-7 unallocatable the reserved elastic user has no password hash, every probe gets HTTP 401, and the container never turns healthy. Seen in infinito-nexus-core CI run 30963648828: the restore drill waited 1200s on elasticsearch while all 29 other containers came back healthy; the generation held segments_3~ next to segments_4 in all three index directories. A run two days earlier passed the same drill because that stack was idle and nothing rolled between the passes - which is why this reads as flaky rather than broken. Reproduced with real rsync in all three shapes: two passes into the same destination with -b leave segments_3~ beside segments_4, without -b only segments_4 survives, and a single pass keeps segments_3. Measured on the same fixtures, dropping -b leaves the predecessor generation byte-identical and keeps the --link-dest hardlinks intact, so the incremental scheme is unaffected; generations get smaller, never larger. --link-dest already provides the cheap incrementals. -b contributed nothing on top of it but the twins, and no caller reads them: the restore path is an unfiltered rsync -avv --delete into the live volume (restore/files.py:35). Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
baudolo – Deterministic Backup & Restore for Docker Volumes 📦🔄
baudolo is a backup and restore system for Docker volumes with
mandatory file backups and explicit, deterministic database dumps.
It is designed for environments with many Docker services where:
- file-level backups must always exist
- database dumps must be intentional, predictable, and auditable
✨ Key Features
- 📦 Incremental Docker volume backups using
rsync --link-dest - 🗄 Optional SQL dumps for:
- PostgreSQL
- MariaDB / MySQL
- 🌱 Explicit database definition for SQL backups (no auto-discovery)
- 🧾 Backup integrity stamping via
dirval(Python API) - ⏸ Automatic container stop/start when required for consistency
- 🚫 Whitelisting of containers that do not require stopping
- ♻️ Modular, maintainable Python architecture
🧠 Core Concept (Important!)
baudolo separates file backups from database dumps.
- Docker volumes are always backed up at file level
- SQL dumps are created only for explicitly defined databases
This results in the following behavior:
| Database defined | File backup | SQL dump |
|---|---|---|
| No | ✔ yes | ✘ no |
| Yes | ✔ yes | ✔ yes |
📁 Backup Layout
Backups are stored in a deterministic, fully nested structure:
<backups-dir>/
└── <machine-hash>/
└── <repo-name>/
└── <timestamp>/
└── <volume-name>/
├── files/
└── sql/
└── <database>.backup.sql
Meaning of each level
-
<machine-hash>SHA256 hash of/etc/machine-id(host separation) -
<repo-name>Logical backup namespace (project / stack) -
<timestamp>Backup generation (YYYYMMDDHHMMSS) -
<volume-name>Docker volume name -
files/Incremental file backup (rsync) -
sql/Optional SQL dumps (only for defined databases)
🚀 Installation
Local (editable install)
python3 -m venv .venv
source .venv/bin/activate
pip install -e .
🌱 Database Definition (SQL Backup Scope)
How SQL backups are defined
baudolo creates SQL dumps only for databases that are explicitly defined
via configuration (e.g. a databases definition file or seeding step).
If a database is not defined:
- its Docker volume is still backed up (files)
- no SQL dump is created
No database definition → file backup only Database definition present → file backup + SQL dump
Why explicit definition?
baudolo does not inspect running containers to guess databases.
Databases must be explicitly defined to guarantee:
- deterministic backups
- predictable restore behavior
- reproducible environments
- zero accidental production data exposure
Required database metadata
Each database definition provides:
- database instance (container or logical instance)
- database name
- database user
- database password
This information is used by baudolo to execute
pg_dump, pg_dumpall, or mariadb-dump.
💾 Running a Backup
baudolo \
--compose-dir /srv/docker \
--databases-csv /etc/baudolo/databases.csv \
--database-containers central-postgres central-mariadb \
--images-no-stop-required alpine postgres mariadb mysql \
--images-no-backup-required redis busybox
Common Backup Flags
| Flag | Description |
|---|---|
--everything |
Always stop containers and re-run rsync |
--dump-only-sql |
Skip file backups only for DB volumes when dumps succeed; non-DB volumes are still backed up; fallback to files if no dump. |
--shutdown |
Do not restart containers after backup |
--backups-dir |
Backup root directory (default: /Backups) |
--repo-name |
Backup namespace under machine hash |
♻️ Restore Operations
Restore Volume Files
baudolo-restore files \
my-volume \
<machine-hash> \
<version> \
--backups-dir /Backups \
--repo-name my-repo
Restore into a different target volume:
baudolo-restore files \
target-volume \
<machine-hash> \
<version> \
--source-volume source-volume
Restore PostgreSQL
baudolo-restore postgres \
my-volume \
<machine-hash> \
<version> \
--container postgres \
--db-name appdb \
--db-password secret \
--empty
Restore MariaDB / MySQL
baudolo-restore mariadb \
my-volume \
<machine-hash> \
<version> \
--container mariadb \
--db-name shopdb \
--db-password secret \
--empty
baudoloautomatically detects whethermariadbormysqlis available inside the container
🔍 Backup Scheme
The backup mechanism uses incremental backups with rsync and stamps directories with a unique hash. For more details on the backup scheme, check out this blog post.

👨💻 Author
Kevin Veen-Birkenbach
📜 License
This project is licensed under the GNU Affero General Public License v3.0. See the LICENSE file for details.
🔗 More Information
Happy Backing Up! 🚀🔐