- Extend .claude/settings.json with git mv, rm, cherry-pick, apply, gh run, gh api, bash -n
- Add make chmod-scripts target and document it in make.md
- Move docs/contributing/tools/agents.md to agents/common.md
- Add docs/contributing/tools/agents/README.md and claude.md with full permission reference in table format
- Fix relative links in common.md after directory move
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>